ConKit Usage Examples

Note

Please download the example data here. This data will be used throughout all examples.

File Conversions

(Multiple) Sequence File	Script	Python
Contact prediction	Script	Python
Residue distance predictions	Script	Python

Data Analysis

Multiple Sequence Alignment	Script	Python
Contact prediction		Python

Data Visualisation

Contact Map	Script	Python
Contact Map Matrix	Script	Python
Contact Map Chord Diagram	Script	Python
Contact Density Plot	Script	Python
Distogram	Script	Python
Precision Evaluation	Script	Python
Sequence Coverage	Script	Python

Model Validation

Model validation with AlphaFold 2 predictions

Script

Data Model

(Multiple) Sequence File		Python
Contact Prediction File		Python

Application Wrappers

Prediction Pipeline

Script

Python