Table of available file formatsΒΆ
Note
If you would like your data format to appear in the table below, please contact us via GitHub.
The following table contains the various different file formats currently implemented in ConKit.
- Type
- The type of information the file contains
- Format
- The source of the file
- Keyword
- The keyword to be used in ConKit
- Parser
- Hyperlink to the documentation of the relevant parser
Type | Format | Keyword | Parser |
---|---|---|---|
Contact Prediction | Al-eigen | aleigen |
AleigenParser |
Bbcontacts | bbcontacts * |
BbcontactsParser |
|
BCLContacts | bclcontacts * |
BCLContactParser |
|
Casp RR | casp , casprr |
CaspParser |
|
CCMpred | ccmpred |
CCMpredParser |
|
COMSAT | comsat |
ComsatParser |
|
EPCMap | epcmap |
EPCMapParser |
|
EVfold (EVcouplings) | evfold |
EVfoldParser |
|
Flib | flib |
PconsParser |
|
FreeContact | freecontact |
FreeContactParser |
|
GREMLIN | gremlin |
GremlinParser |
|
map_align | mapalign |
MapAlignParser |
|
MemBrain | membrain |
MemBrainParser |
|
mmCIF | mmcif * |
MmCifParser |
|
Ncont | ncont * |
NcontParser |
|
NeBcon | nebcon |
PsicovParser |
|
Pcons[C|C2|C3] | pconsc , pconsc2 , pconsc3 |
PconsParser |
|
Protein DataBank (PDB) | pdb * |
PdbParser |
|
plmDCA | plmdca |
PlmDCAParser |
|
[Meta]PSICOV | psicov , metapsicov |
PsicovParser |
|
Rosetta | rosetta + |
RosettaParser |
|
SAINT2 | saint2 |
PconsParser |
|
Distance Prediction | AlphaFold2 | alphafold2 * |
AlphaFold2Parser |
Casp RR Mode 2 | caspmode2 |
CaspMode2Parser |
|
MapPred | mappred |
MapPredParser |
|
Rosetta NPZ | rosetta_npz * |
RosettaNpzParser |
|
Sequence Alignment | A2M | a2m |
A2mParser |
A3M | a3m , a3m-inserts a |
A3mParser |
|
Clustal | clustal |
ClustalParser |
|
FASTA | fasta |
FastaParser |
|
Jones | jones b |
A2mParser |
|
Stockholm | stockholm |
StockholmParser |
|
* These formats do not have a + These formats do not have a a The b The |